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NIH Public AccessAuthor ManuscriptBiochemistry.Price of 1003309-09-8 Author manuscript; obtainable in PMC 2014 April 16.Published in final edited form as: Biochemistry. 2013 April 16; 52(15): 2536?544. doi:10.1021/bi301562n.NIH-PA Author Manuscript NIH-PA Author Manuscript NIH-PA Author ManuscriptDNA Translocation by Human Uracil DNA Glycosylase: The Case of ssDNA and Clustered UracilsJoseph D.Fmoc-His(3-Me)-OH Order Schonhoft and James T.PMID:24065671 Stivers* Department of Pharmacology and Molecular Sciences, The Johns Hopkins University School of Medicine, 725 North Wolfe Street, Baltimore, Maryland 21205-AbstractHuman uracil DNA glycosylase (hUNG) plays a central part in DNA repair and programmed mutagenesis of Ig genes, requiring it to act on sparsely or densely spaced uracil bases located within a assortment of contexts, such as U/A and U/G base pairs, and potentially uracils within single stranded DNA. An fascinating query is whether or not the facilitated search mode of hUNG, which incorporates both DNA sliding and hopping, modifications in these different contexts. Here we locate that hUNG makes use of an enhanced local search mode when it acts on uracils in ssDNA, as well as, in a context exactly where uracils are densely clustered in duplex DNA. Within the context of ssDNA hUNG performs an enhanced neighborhood search by sliding using a larger mean sliding length as in comparison with dsDNA. In the context of duplex DNA, insertion of high-affinity abasic item web-sites involving two uracil lesions serves to considerably extend the ap.